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  • 5 Steps for Shopify Plus Penetration Testing
ShopifyJune 27, 2025

5 Steps for Shopify Plus Penetration Testing

By Alinga Admin

Want to keep your Shopify Plus store secure? Here’s a simple 5-step guide to penetration testing. This process helps you identify and fix vulnerabilities before they become a problem.

Key Points:

  • What is Penetration Testing? Simulating cyberattacks to find weak spots in areas like payment processing, API integrations, and admin access.
  • Why It’s Important: Protects customer data, ensures compliance, and maintains trust.
  • How Often to Test: Full audits every 6 months, targeted tests every 3 months, and emergency checks after incidents.

The 5 Steps:

  1. Plan Your Test: Set goals, secure permissions, and choose the right tools.
  2. Analyse Your Store: Review components like themes, payment gateways, and third-party apps.
  3. Run Automated Scans: Use tools to check for vulnerabilities in authentication, data protection, and integrations.
  4. Do Manual Testing: Test login security, payment systems, and simulate attacks like SQL injection or XSS.
  5. Fix and Verify: Prioritise critical issues, apply fixes, and retest to ensure they’re resolved.

Quick Tip: Regular testing and updates are key to staying ahead of threats. Follow these steps to strengthen your store’s defences and protect your customers.

The 5 Stages of Penetration Testing

Step 1: Test Planning

Start your penetration testing by creating a structured plan that prioritises your store’s security needs. This approach helps uncover vulnerabilities while ensuring your operations remain unaffected.

Setting Test Goals

Establish clear objectives based on your store’s most sensitive areas. Focus on systems that, if compromised, could affect customer trust or disrupt your business:

Testing Priority Key Areas to Test Security Focus
High Payment Processing Protecting financial data
High Customer Data Storage Securing personal details
Medium API Integrations Managing third-party access
Medium Admin Access Points Strengthening backend access
Low Content Management Ensuring website integrity

Each objective should include specific criteria for success and measurable outcomes to track progress. These goals will guide your testing efforts and ensure nothing critical is overlooked.

Getting Approvals

Before beginning any testing, secure the necessary permissions. This ensures your activities are authorised and compliant. Key documentation includes:

  • Written Permission: Approval from the store owner and key stakeholders.
  • Testing Schedule: Agreed-upon timeframes for testing activities.
  • Scope Document: A detailed list of systems and areas to be tested.
  • Emergency Contacts: A list of people to contact if issues arise during testing.

Having these approvals in place creates a controlled and compliant testing environment. Be sure to keep all documentation for future reference.

Choosing Test Tools

With approvals in hand, select tools that match your testing goals. Here are some categories to focus on:

1. Vulnerability Scanners

Use automated scanners to detect common security flaws in your store’s infrastructure. Ensure the tools are compatible with Shopify Plus’s architecture for accurate results.

2. Authentication Testing

Choose tools to evaluate login security, password policies, and session management. They should work seamlessly with Shopify Plus’s authentication systems.

3. API Security Testing

Opt for tools designed to test API endpoints and integrations, especially for custom apps and third-party services.

Select tools that offer detailed reports and are tailored to eCommerce platforms. Regularly update your toolkit to stay ahead of new security threats.

Step 2: Store Analysis

Once you’ve completed test planning, the next step is to examine your store’s structure. This helps identify weak spots and connects your planning phase to the actual testing phase.

Store Structure Review

Take a close look at your store’s components to see how they interact and where vulnerabilities might lie. Here’s a breakdown:

Component Type Security Considerations
Theme Files Custom code changes
Payment Gateways How transactions are processed
Data Storage Systems Handling of customer information
Third-party Integrations Connections to external systems
Admin Interfaces Access control and permissions

Make sure to map out each component and how they connect to each other.

Finding Access Points

Determine all potential entry points that attackers could exploit. Focus on these three areas:

1. API Endpoints

Check all active API connections, paying close attention to their authentication methods, especially those handling sensitive information.

2. Third-party Applications

Examine how external apps interact with your store, focusing on:

  • Authentication methods used by the apps
  • Permissions for accessing data
  • Integration points with your store’s systems
  • Patterns and frequencies of API calls

3. Custom Code Elements

Review any customisations, including theme changes, custom checkout processes, unique features, and JavaScript implementations.

Security Check Review

Evaluate your current security measures to identify any gaps. Here’s a quick comparison:

Security Measure Current Status Required Level
Two-factor Authentication Mandatory/Optional Mandatory for all admin users
Password Policies Basic/Advanced Advanced with regular updates
API Access Controls Limited/Full Limited with regular reviews
Session Management Standard/Enhanced Enhanced with session timeout rules
Data Encryption Transport/Storage Both during transport and storage

Identify where your current measures fall short of the required levels. These findings will shape your testing strategy, guiding both automated scans and manual testing to ensure your security approach stays on track.

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Step 3: Security Scanning

Use automated scans to identify potential vulnerabilities in your system.

Automated Testing

Automated scanning tools are essential for detecting common security issues. Focus your scans on these key areas:

Scan Type Target Areas Key Checks
Authentication Login endpoints Session management, password policies
Data Protection API endpoints Input validation, encryption methods
Integration Third-party apps Access controls, data handling
Payment Checkout process SSL/TLS configuration, PCI compliance
Admin Access Backend systems Permission levels, access logs

Ensure your tools are configured to examine:

1. Vulnerability Assessment

Scan for issues in areas like custom themes, API security, database queries, file uploads, and session protocols.

2. Configuration Analysis

Check SSL/TLS settings, HTTP headers, cookies, access control measures, and error handling processes.

The results from these scans will help you categorise risks effectively.

Risk Assessment

Classify vulnerabilities based on their potential impact and likelihood of exploitation:

Risk Level Impact Response Time
Critical Customer data exposure Within 24 hours
High Payment system vulnerability Within 72 hours
Medium Admin access weakness Within 1 week
Low Minor configuration issue Within 2 weeks

When assessing risks, consider these factors:

1. Data Sensitivity

  • Customer payment details
  • Personal identification information
  • Order history records
  • Login credentials

2. Business Impact

  • Possible revenue loss
  • Damage to customer trust
  • Regulatory compliance concerns
  • Risks of system downtime

3. Exploitation Difficulty

  • Level of technical skill required
  • Access permissions needed
  • Chances of detection
  • Potential attack methods

For each vulnerability, document:

  • The specific component affected
  • How it could be exploited
  • The complexity of the required fix
  • The potential business impact

This prioritisation will guide your approach for manual testing in the next phase.

Step 4: Manual Testing

Once automated scans are complete, manual testing helps ensure your security measures are practical and effective.

Login Security Tests

Focus on essential authentication elements during login security tests:

Test Type Key Areas to Check Aim
Session Management Token validation, timeout settings Prevent session hijacking
Password Controls Complexity rules, reset process Safeguard credentials
Multi-factor Auth 2FA setup, backup codes Strengthen account security
Access Controls Role permissions, login attempts Block unauthorised access

Make sure session timeouts align with PCI DSS standards to enhance security.

Payment Security Tests

Payment security tests are critical for protecting sensitive financial data:

  • Gateway Integration
    • Ensure SSL/TLS certificates are valid.
    • Verify secure token handling.
    • Confirm payment data encryption.
    • Check error handling processes.
  • Checkout Security
    • Validate form inputs.
    • Securely handle card information.
    • Protect order confirmations.
    • Safely generate receipts.
  • PCI Compliance
    • Ensure secure transmission of payment details.
    • Follow proper data storage protocols.
    • Implement strict access controls.
    • Maintain effective logging and monitoring.

Attack Testing

Simulating attacks helps evaluate your system’s defences:

Attack Type Focus Area Security Practice
SQL Injection Database queries Input sanitisation
XSS Testing Form submissions Output encoding
CSRF Checks State-changing actions Token validation
API Security Endpoint access Authentication mechanisms

While testing:

  • Use a dedicated testing environment.
  • Log every test procedure and outcome.
  • Monitor system responses for irregularities.
  • Evaluate the effectiveness of security measures.

Don’t forget to test custom applications and themes separately to ensure they don’t weaken the core security of your Shopify Plus store. These manual tests provide the final layer of protection, ensuring your security strategy is comprehensive and reliable.

Step 5: Results and Fixes

Once vulnerabilities are identified, it’s essential to document the findings and address them promptly.

Security Report Writing

When documenting security findings, use a clear and standardised format:

Report Section Key Components Purpose
Issue Description Type, location, severity Define the scope of the problem
Risk Assessment Impact rating, exploit likelihood Help prioritise remediation
Technical Details Steps to reproduce, affected systems Provide guidance for fixes
Evidence Screenshots, logs, test results Validate the findings

Keep your reports concise and fact-based. Include timestamps and details about the environment where the issues were discovered.

Fix Instructions

Provide clear guidelines for addressing each issue:

1. Prioritise by Risk Level

Address vulnerabilities based on their severity, starting with the most critical. Include:

  • Code changes needed
  • Configuration updates
  • Testing requirements
  • Expected timelines for implementation

2. Break Down Implementation Steps

Make fixes manageable by dividing them into clear tasks, such as:

  • Applying security patches
  • Updating authentication protocols
  • Improving input validation
  • Strengthening access controls

3. Identify Required Resources

List the resources necessary to complete the fixes effectively:

  • Developer expertise
  • Access to testing environments
  • Security tools
  • A well-planned deployment schedule

Fix Verification

A thorough verification process ensures that fixes are effective and do not introduce new issues:

Verification Step Key Actions Success Criteria
Pre-deployment Testing Run security scans, review code No new issues or regressions
Staged Implementation Deploy fixes incrementally Systems remain stable
Post-fix Validation Retest vulnerabilities Issues are fully resolved
Documentation Update Record and update policies All changes are well-documented

After implementing fixes, monitor system performance and periodically retest to ensure vulnerabilities remain addressed.

Conclusion

Summary

Penetration testing plays a key role in protecting your Shopify Plus store, especially as the platform experiences rapid growth, with a 126% year-over-year increase in merchants. This five-step process helps identify security weaknesses, reduce risks, ensure compliance, and safeguard customer information.

Security Aspect Business Impact
Vulnerability Detection Spotting security issues early
Risk Mitigation Managing potential threats effectively
Compliance Maintenance Adhering to high security standards
Customer Trust Strengthening data security and confidence

By addressing these areas, you can improve your store’s security and maintain a strong defence against potential threats.

Next Steps

  1. Fix vulnerabilities as outlined in your security report.
  2. Confirm that all fixes address the identified issues effectively.
  3. Continuously monitor your store’s security.
  4. Regularly review and update your security measures to keep them effective.
  5. Work with certified Shopify Plus experts to add an extra layer of protection to your store.

Alinga specialises in eCommerce solutions, offering tailored design, proven strategies, and advanced technology to create visually appealing, high-conversion Shopify Plus stores.

Are you ready to elevate your online business to the next level? With automation, easy customisation, and multi-channel adaptability, Alinga’s Shopify Plus integration will help grow your e-commerce business. Our team of experts ensures that your setup is smooth future-ready, and fits every requirement. Let’s explore how Alinga can transform your Shopify platform into an effective sales tool, get in touch with us right away!

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cybersecurity Shopify, eCommerce testing, penetration testing, Shopify Plus, Shopify Plus security audit, Shopify security, website vulnerability
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